Scaffold Ga0073928_10000174

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10000174
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 152987
• Total Scaffold Genes: 154
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 111 (72.08%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017357	Metagenome / Metatranscriptome	241	Y
F040221	Metagenome	162	N
F047233	Metagenome	150	Y
F049810	Metagenome	146	Y
F075185	Metagenome / Metatranscriptome	119	N
F091819	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_10000174102	F047233	GGA	LSAAGLNWLRGAAWTVFALDLVILFQMAYAAATGSAGGPTGQALLRGFTIMLASGLLGVAVVLIVSSWKRNAIGLWIALISAAIPLLWVGAGILGVGD*
Ga0073928_10000174146	F091819	AGGA	VRSANNLDPAQLRAVLPVADTDVFKALYYDREQAALRPNLTFIDPNGTIIFETNEVGLKGDPVDPQRKLAVAWGDSVVFGSGRGWACLIDRLAPGWQFLNGGLDGDPYSNILRRAGAFNRRYPVALNLVMLGWHHFVPAQLMTRAATRTRWFAWKHDPPQEIWLPHSGNENLRAELTSFLERTPNTAVLTTPTALNRQIIDRDLSSFLSSGNDETGFRFLGDIPYQIDAQRQGFEHITERNAIAREVCARMRVRLVDVFARFDTENAADFREHFYDVLHFRPRSYPLLTQFIYDQIKDLLR*
Ga0073928_1000017445	F040221	GGAGG	MSEPAIGIAGAVLLGLAILALIFGPRRSKGRFVDTGLAVGTGLLGLAIGLVVAEQVHQPSAISAAAAQPGPPPAPAASPGYVESRLSLQFPIDDANPIGSGQTNVADWYAFRNSIAYTPGTEEKTGKSQEEILKLLADVSWSWLIVVAFDQPTHYSRIDVNFTGGELPYYQITRQDPHYAVIHVQGRIPPGQMEIVASE*
Ga0073928_1000017446	F049810	GGAG	MDRTKWMRLSVRDLGDVVRWAAAQHAREIGEFRYRVVNGREIVSFRLVPRYAIDIGAREIIVVAYARMIGWRARLRELRRIAGALMRRAQEKAGIIAAAPSPLASLPPHRIAQLRPLAAAGQPRTQPL*
Ga0073928_100001745	F017357	AGG	MAVHGLYKATDGSWRQADANKGVPLLYKLKDHERWTLLDRDRAMVVHPNRPAKIVYPDGRVEEIASSPFPSCSRGHGGQ*
Ga0073928_1000017483	F075185	N/A	MAIKAVGMWRTAAHLGHQCKSHWGPLAGVLTGLMFVLVQLTTAHVGDSCTRLGQVAEEWRFGLPARQVMCIATTDGDLVYDRFVAPSRQAARQATTLIQ*