Scaffold Ga0073928_10000050

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10000050
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 261861
• Total Scaffold Genes: 258
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 203 (78.68%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000522	Metagenome / Metatranscriptome	1055	Y
F001517	Metagenome / Metatranscriptome	679	Y
F001701	Metagenome / Metatranscriptome	649	Y
F001893	Metagenome / Metatranscriptome	621	Y
F011313	Metagenome / Metatranscriptome	292	Y
F023389	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_10000050189	F001517	GGA	MKNFSADKSWILSTLEPDQLVKAKKHRIPRRNLKGGELAVLWSLRVYLVFMMIVVAYQFWTAAR*
Ga0073928_10000050236	F023389	GAGG	MKSFLSKSIRTAMFLLVSAGTCHLLAQDTGGQPSVLHIQQSVTTSKPGFPEFLYTYQVLGGAQSSGEALGLTGTISLKNYTPTFSEVLWLLAYWKGKCPVNDQRLIGANFIWSDILKNPSLSDSELQVDLRFPHPLPMTGCLGLVFAGGPLLEGGATMSADLDLTYQASDPVANTVLDLSGEYCFGQDWGCQNATTDDAMAFGVPIMMLTAGHLVELFGDISDSTFDGTKYYGPLPTGKLWGAINEFYLLPGGCGQFGQNLNGQGFPNPQLLSTLYSWLPGDAVHLESVPLEYKILQGERAKAALQSRVERIFPAPLTVNAGDCVVVIYGRTGNGATDNETQVHAVLAP*
Ga0073928_10000050251	F001893	N/A	MTTAKALGGFLAILFVVVACFQVAPPLMANYSFQDDLRTVALMDSGNLQKSEDDVRNDVMRKVKEHDLPIEPKQITVQRINTPGLSAIYVAADYNVTVSLPGYSFDMHFNPSSGNK*
Ga0073928_1000005064	F011313	GGAGG	VSKTAAVVLAFLCITLFPTASKAQLLPSGNVYGGVAYADSVDIINRLTFKGWNASLEDLPLHRFSYLGIVLDGSGVYRRGVQQYNLVLGPRVSKNYGKWRIFADAMGGIQQLTSSGQTFHAVAIDGGAGVDRKLPFKNFSWRFQFDYVHTHMLSAKQNEYRGSTGIVWRF*
Ga0073928_1000005082	F000522	GAGG	MDHHEAVRKFEHLMLKEADHAREVATELEALAPALTTENARQLAQVQIKASHKQAKEFRELAEKVKEK*
Ga0073928_1000005093	F001701	GAGG	MNSIKFLYAAYIATWVIHGFYIGSLVRRYNRLRQQMNMRK*