Scaffold Ga0073928_10000049

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10000049
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 263661
• Total Scaffold Genes: 233
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 113 (48.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037824	Metagenome / Metatranscriptome	167	N
F090803	Metagenome	108	Y
F092490	Metagenome / Metatranscriptome	107	N
F095042	Metagenome / Metatranscriptome	105	N
F101596	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_10000049121	F095042	AGGA	MASTSLPPQGYLTRRPERIFEPLENISSYPSHLVRWRECADSKFKLSSYVFIGQRTNNLPVRMAFVAGLRSHDDLAHRALAKLLVELEVAPLAGADYALFSYAVTREPSDEISEGFSNDWLDESSGVQPILQVLESDMASSDVDGFISIATNERVSGFQFETDSELIATEVAWPTLEVAGRFVPLAEEPVKVLPSAILRRQRGLGRGIPKQMFGLTLRTSEDSGPEEQIAAIVFSSIRVLQQYRRLRRAAVDL*
Ga0073928_10000049127	F101596	AGGAG	VNRIGCSISREVKVARDDGTFYLQRSTCSIELRFESEAQVFITVAWHTGAKLLGHGRKDWQAESLTKAIKELRDYSPTPEVPYPACLMDILAQLPLNVVKFNLDEKGGNAETASPEQSDIQRTSSAS*
Ga0073928_10000049162	F037824	GGAG	MTRIIYLGAVILAALGLASSEAFGQTSDRLSSTAGIAPIGVNSSLVGNAAGFIVHYAGKDVIYLWEGSNAYPLATRTNDPSVVISPYAPHNRVIVTGIRSGELVMDPSVMKAFIKP*
Ga0073928_10000049198	F092490	N/A	MAKIPHPIRLTGLVLSAVIITFGTARAQKAPATPAGTPDEKTITGSGNLPSPTWLFKAISAALPEFDWKAQVRQFVADPNFEKSDYPDDLSKISNLGVRLAVAFVAIMAQDYDSLEKAASVSTELASGFSVASDIKSKAEEAEEAAKAGNWDVVNAKLDLIAQDVAKELKSGSHKEEATMSFATGWLTGLNIISTALANDYSEGAATLIRQGPLPGLLVTQLKSVSENYKSNNDGKDHANYKTITDGVTEIAEAVKKDQNKPLTKEEVTTLRDKSGKLIKDIETLAS*
Ga0073928_1000004962	F090803	AGCAG	MIVWLGLLTLTSCVEMQAVDVRPKSGALLIDSTDVLYLRGLLVQTAKEYGLEPQELASSDMIASYQGGKKGPFSAGIAFILLWQHPSPSRLEIDISGPTPIGATILSKRIFREVKAKLIEHFGSDRVRDVSKTVVNPI*