Scaffold Ga0073928_10000046

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10000046
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 270557
• Total Scaffold Genes: 229
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 175 (76.42%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000525	Metagenome / Metatranscriptome	1049	Y
F000677	Metagenome / Metatranscriptome	940	Y
F000688	Metagenome / Metatranscriptome	937	Y
F001303	Metagenome / Metatranscriptome	727	Y
F030837	Metagenome / Metatranscriptome	184	Y
F069199	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_10000046157	F069199	N/A	MPENGIKKSLQLRDIAPSDLEEVARFIGRLSGSETPLTVAVERLSWILLENPARTAGDPLGWLLRNSSGELVGCMCCAPQKFCMGQSTFTLLMANSFYVDDRFRGAGTSIFLKYLQMGRRYPLFVSSANPTVAAMWQKLGGYRLGNSDHEALGILRWPPMLAESVYRGTGSGWLARFTSAIASPFFRVRRQLPVGNLEGELLPLKNAEDAADICAQHHSDKITNCREAPFLNWRYFSHTSPQTRLFRFNTGDGEKKQFMIAVRLQNRGYNQQIKALQVLDIWGETDPQTVLAIASCLWREYYDQIDMLVFRCLSLTHQRALQARGFKVRSFPAPIAWCIDKYGLLPSKDWHFVSADGDMFL*
Ga0073928_10000046162	F000525	N/A	MRLPQKLSTLLSCFVVSCISLFGAGCSPRNFLTRRLAGDLIAAAEAFKAPQLFWLRSGVISNKEFSSPEMMVLKRRGWVVGNEQKKCPIGVDPAPCWDVLLTPLGVDTVRPLISTAVPDAGTIAIQAARREMLGISGISKAGNFADVEFVWHWVSLNQVGAALYDSGVRYRSTVAFRSYDDGWRVVEQGVSPSQPLEDALRNAQPAAP*
Ga0073928_10000046203	F030837	AGGAG	MDDNLVGLVAATLFFGVPLAAMYTYYRVRKLRTEERLAAIAHGANVAMEPDLSEAAQSRRWGILLVAISLGYIAMMALITRANPEAWKGAAVGCVPLAAGIGFLVDFALIRKDLKYAN*
Ga0073928_1000004622	F000677	GGA	MRYLLAIVLLSVAVHAQSFTSNNDPALPDAPSQKPFWTTGNKVNVSILAGLVSADAITTQRGLNQGLREANPLMRPFVTNGAVGEAAGSALGFGAALGAVYLLHQTHHYNVERVAMRLMLAAEGGFVANNIIEIR*
Ga0073928_1000004626	F001303	AGG	MDHENRESMEEIRLRISNVTDDLRVIQRELNCAAMQAPTDPELMEALANQPEMESIQVLKSALDQMRHFLWFYIQVVTSDSEMGEKFRQSLRQDASAPAVPDMERQFQNATDAIMLRYLADSKFRKPN*
Ga0073928_1000004669	F000688	AGCAG	MAEGGHRARAKLQSISVTGGLLQLQQQMSAGDFVEIAFHTRSGPIRGMAEMLKPTRTYQSACLQPFRFIALDDDDHRKLRMALDLARDRAFLDPASEQSQSPRGF*