Scaffold Ga0073928_10000044

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10000044
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 278074
• Total Scaffold Genes: 256
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 187 (73.05%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000269	Metagenome / Metatranscriptome	1410	Y
F002012	Metagenome / Metatranscriptome	604	Y
F002461	Metagenome / Metatranscriptome	557	Y
F003337	Metagenome / Metatranscriptome	493	Y
F010883	Metagenome / Metatranscriptome	298	Y
F019706	Metagenome / Metatranscriptome	228	Y
F055027	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_10000044113	F002461	N/A	MQAQEDSGETPLGDVARSLRKKPASSEAVIDNDNLSKVVDDAASRRVAGTSVVFSLDPGGKSFHVSSPDVTCSLSFSAKTTALLADPVVLDELPRSELAKLDGPATIDGDSLQVSMHNGTSWDLREIVIGLTIVRSPQPGESRSQPGQPRIFPAAAGDAAQSTADPYQKQPDMTMLLRVKGSAAPSATATFRTPLNFALFPDQEWHWAIVRAKGIAPQTPAEMPAGQDEQKGMSPSAATTEVSPQNPPSVAPPSNPDAAVAIH*
Ga0073928_10000044126	F010883	GGAGG	MTSSAHDEAWELIALGDDLSDAQRTKLRVHLQECEACRGYAEAAGRVVAAVRSLPLAADSRLVRATQMRVRFHAGRLREARERLWFVGLACLGVGLSATLTLPFLWRLCAWVGGWVGVSPLVWQASFVFIFIAPALGVSILLLARGTHLTDNAEQSRPWRQES*
Ga0073928_10000044136	F019706	N/A	MNTPLLAPPLSALDELKLDVLKLNELKKTGEVKKKRVLLVDASNVKRDLRAEVMRKLGIDVDCAADLAEARSWWRADLYDLVLINLEKGRGHRDRFCDDVRGATPPQRLAFLVGKPEYLSASPSADEELLLQDTADQILVSDVKAALSSNVGDLSQRWGILEASRRISAVRSACSARTRAMRDRPVPPRDSEARPFKRIADSTTLDDLLREEMQ*
Ga0073928_10000044143	F055027	GAGG	MAITFMAVVAGLIFSIAVALLTEELIFGQVCRVFFARPLAPRSAPPKDRQSR*
Ga0073928_10000044241	F002012	N/A	MTVSSLYFALFKLIRGGFVYAGAARGTWVASAAHPLRDRPAPVAALVLVQRLSSHKNDIYNVLWAVVFGFATLNILSLAARRFEPNRRGLTFGELMAVLVVLLSIFLLGWEMLGMFHIFPIKLQR*
Ga0073928_1000004440	F003337	N/A	MRVPVIRTFVCWVMMSMSPAALAASDPGSAVLRSNGGVWVNGTEVVASIVIFPGDLVETRPGFVANLDAEGSSVLVQSESVVKFQGNYLDLEHGGVSVGTSTLMSVHIKCMRIEPVAAARTQYDVIDRTGAVHVAARKNDVNIKQSEGLRKPAAGNSSAQSATVHEGEQTTRDETTACGAAERPEGPGHALNTKWIEIGGGAAGGVIALCLILCRGSSPSSVSPSNP*
Ga0073928_1000004470	F000269	AGGA	MKSSWSFRDCWLIAGSLLLSVLPAASESPTKPTDVPATVIAHLPLPQAAGNQMLLQKENGKQYLYIQQAGKTGFMIVNVSHPEEPSLLKRTAESNQATSGNLEMVSPDIAIAEAPEKTPNTLSSNAHPTETVRVLDLSDPKNPKTLETFNKVTSLLPDGGHGLIYLTNNDGLWILRYSRPSRLEPAKKKPPCDSSSAIQAMPPDCQ*