Scaffold Ga0073928

Basic Information
Taxon OID	3300006893 Open in IMG/M
Scaffold ID	Ga0073928_10000034 Open in IMG/M
Source Dataset Name	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	314322
Total Scaffold Genes	301 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	224 (74.42%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

314322

Total Scaffold Genes

301 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

224 (74.42%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Banff

Coordinates

Lat. (^o)

51.1699

Long. (^o)

-116.1578

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F000378	Metagenome / Metatranscriptome	1211	Y
F039510	Metagenome / Metatranscriptome	163	Y
F078314	Metagenome / Metatranscriptome	116	N
F099609	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_10000034130	F000378	GGAGG	MEDRAPVSQVSQQTSPHSSRNRHFAGRGAWVLTAYGISGLALFGLLAYFFSDFIAH*
Ga0073928_10000034196	F000042	AGGA	MTNTKFLVRVNRSGTRAPEYVQRIDRTPIQTTTNRKLALAMGRFTAEDAVKSIQNSRCTPELISVQVSA*
Ga0073928_10000034213	F078314	AGGAG	MFRTRTLMAFLLVAMVVGLVLTGSGTAWAQNQSDVFWVAYYSGGVTSAGAAAGTDVQIINTGTSGGNLCADVYVFDVHQELKECCHCNITPDGLLTLTMAQLTNNPANGVFSTNGVIKIVSDAGSNCNEVSPVPTPELRSWIVNPQNNGTITESEFEATPLSAQELNDLKVLCSGVPNLSGPGVCARTNPACD*
Ga0073928_1000003460	F039510	N/A	MDGPSIEKLRDELTRLMREHIENMQKRTFLGISPEDVQLEKERLQRIREVSADFLEALKRLSR*
Ga0073928_1000003483	F099609	AGGGGG	MRFSSAVTLFVLTAAFVFAKDQDRNKVCDAASASTADHYAGVIVQKFTLRGEWGRNDATVYLPEKEIAEAAVVFSHSSILAQGASTDLLPLALTLAHAGAAVIVPERSLLWPPTDQSTNREGAVVVCAAHWILDHTEVFNNGMPVVNDQNIVVRGGYAYVGPRVCDPAPSSHCQFRIPFHTDDAALSRYYRHSAWVPVGETEGGDSTDRIISDGGLQAARWLQKNLGLAPIIAVVAGVSSSEP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0073928_10000034

Overview

Ecosystem & Geography

Associated Families

Sequences