Scaffold Ga0073928_10000025

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10000025
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 357518
• Total Scaffold Genes: 360
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 251 (69.72%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000249	Metagenome / Metatranscriptome	1459	Y
F000801	Metagenome / Metatranscriptome	886	Y
F001709	Metagenome / Metatranscriptome	648	Y
F003117	Metagenome / Metatranscriptome	506	Y
F006150	Metagenome / Metatranscriptome	380	Y
F008825	Metagenome / Metatranscriptome	327	Y
F011862	Metagenome / Metatranscriptome	286	Y
F017681	Metagenome / Metatranscriptome	239	Y
F024747	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_1000002510	F000249	GGAGG	MRSLAWILAFSILMAIFCPAQSTPSTANSQPASSQPRMFFPSDMFWGWAQFDLAPPHNEIDPNLCAGNAGQYGGKQAPCSMFARYMLSGMLEVRPFGRSQLRRLMIFGAPSFLFGKNVPQTLYTWSPDAIGIEHSWGAGIFIAKGFEFRVTQHFLFDRLGARDTNLGIADLGNNGPWGRYMTVGVHKSFGTRRW*
Ga0073928_10000025158	F003117	N/A	MGAMPDRKLQIVRFIGSTPSTAYCDVCKLAFRTRREFLVDAEKARQQLQEDFAKHECKPEEGAVDEALAHIK*
Ga0073928_10000025267	F024747	N/A	MPSPSPRRPGERAPRARFWENTPAVLRSPRGFTRGKLQVISLTGGLLTLPKPLDHGTRVKLMFLTPKGSVFGAAEMLPQISWSLQPFKFTRLYDDDEGRLQATIQSSLGQRRRRHDEVERFRAW*
Ga0073928_10000025271	F006150	AGAAG	MKSAAGNHAGLRAAAVAGVMLWLMAAPLSFATGDEPTVDELKARIANASIADRPPLCIHVCERQVDMASRFYVAGDSDKAQAALTDVAAFAELARDYAIQSHKHEKQCEIAVRKMVRKLTDLEHAVSHEDEGTVKSTVERLERVRDDLLAAMFSKGNKK*
Ga0073928_10000025286	F011862	GGAGG	MMRASLFSAVLVLANVSSAQTLPATQSRPDPGRDSAIRIVEQIRRADYEGDRAALKRLHSELAPPVQDKILISRIDYWRGFALWRRAINGFNETPTPPDLAEDLNGAIVDFKDSLAQDPAFVESKIAEASSLGYLMFMNTKDQARVQQLMQQAGPLLKEAMASDPDNPRLLWVLGPVRWSSPPERGGGQDKAFDLYNRGLEIIRKRPANADPLEPSWGEPELLMNRAWSNLHRTVPDLKAAQKDAEAALLLVPYWHYVRDILIAQIQDAQAKAH*
Ga0073928_10000025339	F000801	GGAGG	MADKEWTVKELTEALKKFPLEAKVFYEMGPNGAGTIGKAQYVKARAEDNEFGVLLDR*
Ga0073928_10000025341	F017681	N/A	MSNFEHSGRLAKLHYVGVKTKELTPKQTLSVPCTTCGAAVGEACELHTGALRTEPHRDRKLSAAEAVEREAAKP*
Ga0073928_1000002557	F008825	GGAG	MDCVELQQSLAEVEDGSSLEQQAHLKMCPACTALVRELSLIVATAGQLQEADEPSPRVWNSIEIELRKEGLIRTPRAEHPFLPSFVARWGPARWLLPAAAMILLTVAIYERHQYESSLTTERASVALPATNLADLNDDDLMQEVEASAPAMKPQYVENLRRVNESIRDAQGLVDESPNDTDARRSLMDAYQQKAMLFEMAMDRSLP*
Ga0073928_100000259	F001709	AGAAG	MPQEISVSYQAIKSKVYRLIDALVVGEKTEVEVQESIRRWWELIHPADRPIAQKYLLIVLERSRSALDAVEAGLAEVTDHEVSRSSDAAKALKLVDRMVKQAAKPSGLGTTA*