Scaffold Ga0073928_10000022

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10000022
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 368460
• Total Scaffold Genes: 384
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 178 (46.35%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008457	Metagenome / Metatranscriptome	333	Y
F008582	Metagenome / Metatranscriptome	331	Y
F026421	Metagenome / Metatranscriptome	198	Y
F039361	Metagenome / Metatranscriptome	164	Y
F084685	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_10000022175	F008582	N/A	MKTKLALKVVGLIGVLALILAGYCFWLMTVPLSYDWVPVVLIGLILSTGAFVISLITSFIVLIGLRRLPRSPNAPQIGPTI*
Ga0073928_10000022288	F008457	N/A	MGPVMTAITVKRKIVRRTRAQRSATHQSLRELSRSYLAGERIVEFTIEALLFAIIVAISAWPVLAAANALSEFLPQV*
Ga0073928_10000022316	F026421	GAGG	VAVVSAAESRRSPQADASYKKLSFLFRAGSFGAAVTAGKFLDAARGIDKLLFAGEKGMTSGTNADLNIATRGASVIHRTACAHHISFVVFWMNVCFHLLNGARNVFATAGFCKR*
Ga0073928_1000002281	F039361	AGG	MEVKFTERERATVLAALRRWLSYPAAREADSVATNRGKHKPLDDGEIQRLCKRISEIASKGSAAPLRHSNNGAGIQKDPKLRNDQLDARNLYQRR*
Ga0073928_1000002296	F084685	N/A	VKSRPNILRPLERFSFFRDVLPERVGQIGRDVVPGFGGESIEKGPVFITDPAPREPPDRAIGWVAEQALQGGTVGRPALGIQHAQMKLKEAVFVAPEHRGHVTVQDEAILIGQSFAVGGARYDVANPGIAQAREEFDVARASSLLH*