Scaffold Ga0073928_10000021

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10000021
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 385309
• Total Scaffold Genes: 367
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 254 (69.21%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000132	Metagenome / Metatranscriptome	1972	Y
F000508	Metagenome / Metatranscriptome	1069	Y
F002201	Metagenome / Metatranscriptome	584	Y
F003398	Metagenome / Metatranscriptome	489	Y
F006353	Metagenome / Metatranscriptome	375	Y
F009411	Metagenome / Metatranscriptome	318	Y
F017346	Metagenome / Metatranscriptome	241	Y
F019610	Metagenome / Metatranscriptome	228	Y
F054207	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_10000021125	F002201	GGA	MWINEVAPERLAELFHHYHEALAPEASGKGSEGRATWKEVSQQERSRLVAAARLALLELQAMAAERPKAHQYFARPGEAEWGC*
Ga0073928_10000021139	F054207	N/A	MPKRNLRVLKWMGMTPALAACTLCKREFKVPLESLKSVAGAQKYLQLQFTQHECEKAPDAPVG*
Ga0073928_10000021157	F000508	AGGGGG	MMMNKVVVASLQKEYSRLEAELGKIGKALSALGYSGGKKLRTAHVLSKEARARIAEAQRLRWAKVRKAAAKVEK*
Ga0073928_10000021166	F009411	AGGAG	LTKLNDEHNKHAGIARLISDLRTAKVELLSAQCATDRLRLQHSLDDIVSFGERQALQAAIASAGALCRFYNSIADQLKQADRQE*
Ga0073928_10000021198	F000132	AGGAG	MWIEKLADGVVQVQTPIGPRYLMPSFLQRVYFLWMFRHFPILPHAVLSRGQQRMIDRLCSQQRFVSMAYADGLEDAPVIGTVERRLAPGTESLPQRRPVAGETSAALPAEARQRG*
Ga0073928_1000002123	F019610	GAGG	MRAYLSRLTPKTFILLALPLLAIAYSVVTMVVPAVVHAVVPDVVRSVLSLI*
Ga0073928_1000002125	F017346	N/A	MGIFDSFRKDEVTGSKVLVCQLGTSFDEHLKSDLRVYKRFYPAASSATFTSVAELRGAVSHQYDILHLFCDVDNRGVIADASGDRITGSDLLSSAVASGVKLLWIGNDNPQEAYDAGFQTRGLKINVVLTLRRLGSNTSLFLDNLLGKMSAGEQLSKAWTAAQPAGKSVQPDVPHTVSSLGRGSVVLK*
Ga0073928_10000021289	F003398	GAGG	MTTSNPESALLSEVCAQVKRLGYAATKHVRLYGEDFQVVSDPFPEADGVAVHVTTKKDAKVRVLRLPATVTQSLKPRRRAA*
Ga0073928_1000002162	F006353	GGCGG	MRMRLLAGMILSVAVLPAQSGERPVYAESFRQGSTHVVEEKFEVRLTPQDPIYRERIKDSHGADRYALSIVPQGPEGDTTITSWQVKLADLHHRIYDNVLMASQTPSEEAGNNLWWLDPSNFAGVPISAKRIIKVEDFYVVLQVKARHLTPPDSPYLDSMTVAVELTNKDPRTAQESHSGNP*