NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075429_100275539

Scaffold Ga0075429_100275539


Overview

Basic Information
Taxon OID3300006880 Open in IMG/M
Scaffold IDGa0075429_100275539 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1473
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034869Metagenome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0075429_1002755392F034869N/ARPRSADHGYTLVILERLGIDPRKVTFLSTGGQASRATAVEAGTTVGSSFNRYYMLQLKRKGFRDLARLERPDYPFPPSIFVVRKDTLQSKRKGLKSMLLAMMEASERQKTDKELSLQLIRKNLRLQNPEVVEAAYEDGVTISYPYFTERQFQISLELLGKSMGQSVSLNYKQVVDHSLLDEIGRAGVNRPG*

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