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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006880 Open in IMG/M |
| Scaffold ID | Ga0075429_100006947 Open in IMG/M |
| Source Dataset Name | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9835 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (81.82%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Tennessee | |||||||
| Coordinates | Lat. (o) | 35.8443 | Long. (o) | -83.9607 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F038776 | Metagenome / Metatranscriptome | 165 | Y |
| F071164 | Metagenome | 122 | Y |
| F094469 | Metagenome | 106 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0075429_1000069475 | F094469 | GAG | MNKNALKKILEHPDKDEIIAKLVLDYPPKDIHEWLAAKYTNVSEAKFVVAEKSIKVFKENYLDVYSMIREDMMKTKQAVATSTEDQLELAVKSNPTYKSKMLELAGKEIDVRQMVAQLCLAIETRLGQVFDEIQEDPRNINTKIDRVLIEYGELLGGLLEKYYKFTENPADLVIQHNVTLQAVDQHISVFHDVIREVLSQLDLESSMLFMEIFQEKMSKLRPPALEQPLNTDMKLAEAKLLNETINKKLNN* |
| Ga0075429_1000069476 | F071164 | GAGG | MRIAELLNAMASWLSSPNNEALLLAESDEKCMQVVAESCVLAAELLKKAADEVDALEPPTESVITSQSIEETAALAQALDESGDPQLKRVASVLDELLLTIAAPPNAYAERKDLVDARADEVRKKYEQPAKDLHKYNQIEKSEKAIEKSNFTKDYRILEAPLSSRYCPDHPGAQIGRVGEHVWQCELDKKTYNFETGFQLNNGSKVPGGDVAQQTNGLDTPFHAIFDTREGRLGYNK* |
| Ga0075429_1000069479 | F038776 | GGAG | MSKFSIDYSGLAKITKKAYRLSDVKDQLETVAFDVVRFKDGDKGAELWQVQSAEDGDYIVSLYDEDESEGTEKTASSNPWSVLVTKSGTDLQIAYKGDPLVRLASSKLGIPSSELHRAEQYLPEKLATNKKLVKALLSELSEAARLEVSRRYPELV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |