Scaffold Ga0075429_100000777

Overview

Basic Information

• Taxon OID: 3300006880
• Scaffold ID: Ga0075429_100000777
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25161
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (76.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026598	Metagenome	197	Y
F034225	Metagenome / Metatranscriptome	175	Y
F096805	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075429_10000077713	F034225	AGGAG	MPVETSTQQMALTRDQGPGGFMERVQAMMAFCCGTVLGEGGSVPYHPLRASYAQRVVSNPRMAADQAAPQVVMGVNVVAATTYHEETKTSTCTIADIDLQSQILTLWNSLAGIDTA*
Ga0075429_10000077724	F026598	AGGAG	MSPIVQFSDRDLLRGKVVEPAWYVVNIDNIGEGPSKDGGSTNYPVEATIIKNADTGSEEYAKVPLDWNFNSKAIGFAVGFLNSFGVEVKSGARFDLANAVGRQVEVFVENGEWQGRMVNRVNHKYRPVRS*
Ga0075429_1000007778	F096805	GGAG	MPLGSAASEASSGENISHFAAIRVRVYGVGKLYMFVFSLDDVRYKTLVPFKLEPRARIIPTRIVNFKEQRAAFELKTSGTNEYFRINRIVIYSKESDSSYPGS*