Scaffold Ga0075473_10102459

Overview

Basic Information

• Taxon OID: 3300006875
• Scaffold ID: Ga0075473_10102459
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1135
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015472	Metagenome	254	Y
F025741	Metagenome	200	N
F074878	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075473_101024592	F015472	AGG	MAHFYLNQGGTRWYSDGMVQVTGVYKDKVYDRMRQPMFWEQLGNFAVCYVRVGRTVFCGFTNDNNGTIQLKLEKCRVVR*
Ga0075473_101024593	F074878	N/A	MNTTDKVIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYSRKYGVEWLLQDGDKFYSQKGLVK*
Ga0075473_101024594	F025741	N/A	MENTTTTIKQFVNDHVEGDPLFKGYVVVELGILMFQNPTMSMSELLQDATEVALEEWDRDQNQD*