Scaffold Ga0075473_10022769

Overview

Basic Information

• Taxon OID: 3300006875
• Scaffold ID: Ga0075473_10022769
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2408
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005504	Metagenome / Metatranscriptome	398	Y
F009685	Metagenome / Metatranscriptome	314	Y
F033433	Metagenome / Metatranscriptome	177	Y
F088889	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075473_100227691	F005504	N/A	NLVPNCLLTLEYEEETGWGGEYEIVRGDVKELAEWENRCYACQSFDTLSYCEDDCGEFCSNCNQGSWQDEEAMAKCQTHMVLLDTTEKVEA*
Ga0075473_1002276910	F088889	AGGCGG	MSKTPEIKVAEQITNLSEDHWFNPAIMARYLIDQPFYTTDRIMELVAQIIKWGGRRHEDELTPSGIYESNTSSEGLFLANE
Ga0075473_100227696	F033433	AGGAGG	LYNKPMLEILEVNYSVSPGGIDEFEVYSVDERDHFDPPIYTSTKLEEAVRFCYQLGKDFTVRTLAQWEERELAYEA*
Ga0075473_100227698	F009685	GAGG	MKMSDQYVDSVLAEAQRLLWGGSETENIEAHNLISKLIKDRSEQKNLN*