NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075473_10001945

Scaffold Ga0075473_10001945


Overview

Basic Information
Taxon OID3300006875 Open in IMG/M
Scaffold IDGa0075473_10001945 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8538
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (38.46%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000847Metagenome / Metatranscriptome861N
F001129Metagenome / Metatranscriptome768Y
F006105Metagenome / Metatranscriptome381Y
F007748Metagenome / Metatranscriptome345N

Sequences

Protein IDFamilyRBSSequence
Ga0075473_1000194513F007748N/AVNLIETTIIGTVSAIVGGAVAWMTKGKFTADSLQVKQAQAVLAMWQATAEAQNKELTELRNELLVLRQRIESLEN
Ga0075473_100019454F006105GAGMIYLSPNTTNTIVVTWTQRASSGDRYILRLTNIAKNVSTDFTLLKSDNLSSYTERYDKFSLAVGSIETGSYRYEVYDTNSTVAAAVAVVETGLAYVQVVSLTFNTYANTITYQPYAASAVGIFDSTFDPSFA*
Ga0075473_100019458F000847N/AMSWIKIKQALLNLANSHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSATTDLGSLVLTVGVYFSDRVESIATMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISALTNDPTQEWTLSTSVNLTRFVESRDDRTAGWVATMTFEIPYSHSVCEIPS*
Ga0075473_100019459F001129AGGMQFIDAAVSGANFDFIVVNTAATFTTLTGTGGENLLTAYAMSGKSVSAGIVISGRNGGKITAVTPSVGSVIGYTFL*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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