Scaffold Ga0075475_10042489

Overview

Basic Information

• Taxon OID: 3300006874
• Scaffold ID: Ga0075475_10042489
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2162
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020533	Metagenome / Metatranscriptome	223	N
F031662	Metagenome / Metatranscriptome	182	Y
F044429	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075475_100424893	F020533	GGA	MNKCIVKGMFFMQDAIMLEQDDLVAEFERKVRDKKIFFEVINPGQAESKGVDIEAMLEENNKLKSELRIWKDIVEKSITADARGGFNG*
Ga0075475_100424895	F031662	AGGAG	MDFKIEKNIPVRTFNSPFCEALDQLEIGDSIGNLTKKEVYKYRPNFYTPTFRDRKFTFKKETGTMYRIWRIA*
Ga0075475_100424896	F044429	AGGAG	MSELPPIEDRMPGCEWVLVIKYGDPYTNTPLTTGFGPFPTKEDADDFRAQYYYDQIVIADIVPINAVLPQSATELDIDFIPEGKVVDISSKINPHKH*