NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075434_101715791

Scaffold Ga0075434_101715791


Overview

Basic Information
Taxon OID3300006871 Open in IMG/M
Scaffold IDGa0075434_101715791 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)636
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032401Metagenome180Y
F068176Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0075434_1017157911F068176N/AMTRRLREEPMSPQTARAFLDGLPRMRAALLNSRRILGPVAYARHIHELDTEERDAKAILRRTQLRVVAGTALDE*
Ga0075434_1017157912F032401AGGAMKPMKLAEVRKHTGCRLTVEDAAQYVSPGQSTTVTQNQACALSLHSWSNSPTDWLRLEACLVLLADKRRQK*

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