Scaffold Ga0075434_100664941

Overview

Basic Information

• Taxon OID: 3300006871
• Scaffold ID: Ga0075434_100664941
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1060
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001698	Metagenome / Metatranscriptome	650	Y
F002850	Metagenome / Metatranscriptome	526	Y
F006905	Metagenome / Metatranscriptome	362	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075434_1006649411	F002850	GGA	VTGIHADIDALKGLHGALARYRHAQRDVTARGEDQVRATRAALEEKASQLRAQLELSQGEYAGCRERAAQAGPEDLPVDCSGYARAVAQATERIEQIQRWRQRIDAEAGEFSGVAGRFAAMLADDLPRMEEHLAAMIASLEAARRVQAP*
Ga0075434_1006649412	F001698	AGGAG	MSGVVNDIEALAEFRSHLMRFNHDLAENFATIQSHWRELGEVWRDDMYRLFGEALEEVLPGITAYLEATEGHEAHLAALIERLGGYLETGAGAGLGVGRAEVRRAQGTGSGRGTERRDRNSR*
Ga0075434_1006649413	F006905	N/A	RFLPPLAAAIGALMAEQQVEIPYHSRVEHIATGGVAKYPDIVAMSLDELAAEFEGLCRRTGRETT*