Scaffold Ga0075434_100381917

Overview

Basic Information

• Taxon OID: 3300006871
• Scaffold ID: Ga0075434_100381917
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1429
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001440	Metagenome / Metatranscriptome	694	Y
F004510	Metagenome / Metatranscriptome	435	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075434_1003819172	F004510	AGGGGG	MITWALIASAVIALMLVVLVQGKWTSRDSWFAAVFASAVMAMVIDHYVSQIN*
Ga0075434_1003819174	F001440	GGCGG	VRGRIANAKSIGWAIYAAGLAIWLFGYLSVGHAPLFDWKAATPWWISSFVPNLEAELGLALMFASMIPIYWRAGRKRILGA*