Scaffold Ga0075434_100146468

Overview

Basic Information

• Taxon OID: 3300006871
• Scaffold ID: Ga0075434_100146468
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2382
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002070	Metagenome	596	Y
F054650	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075434_1001464681	F054650	GGAGG	MILTLWLLSLPFRLLAALGLRRSVILACLFVLAVTAYGVAEDLGLLEPPAQAAPAPKKRAAGQSTPGRAAVADIPAG
Ga0075434_1001464685	F002070	GGGGG	MTRQVDELARHVRRLGNHELNELLLQLPKATYAALVEVALARPVLPAGLVLRFEPAPGVDGWTVVACAPRRQLGTLTRDREPNGRMAWRAWTRAGDPVQLAGVGWWRRRLDAGAALAWVTPVSGARCLALAAHVRALPDRQLHELLGGLPRERFDRLVEAAYAPAGSAA*