Scaffold Ga0075479_10021379

Overview

Basic Information

• Taxon OID: 3300006870
• Scaffold ID: Ga0075479_10021379
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2844
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001873	Metagenome	623	Y
F004131	Metagenome	451	Y
F038218	Metagenome	166	N
F093801	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075479_100213792	F001873	GAGG	MTIPRWWNVLAALAVLASGADAGVIVMSTDYTAGGVFVAAPTDGKGDLIQWDLTAVGGGGAVWLNADGFHNNHLERQYESRGFRYGIKRIPGAVPDDISEFVTVDWIQHHRDGAVEFGGNDSRGMVEMFAERDINLQPGFLEITLRNDHEYALWSVNGQLLYEHITNQSNLQTFRHDLPNGLEGLRFDFAGSGTADGVIERIEFHEYSTVPEPSLGDLIDLIGNGVGGLIGW*
Ga0075479_100213795	F004131	GGA	VADVSQFPFSVMRRQLITPLVQEAAELLWPAERRRVTVLLRAPEFWDECTSADLEASEELADICFDLWVGARG*
Ga0075479_100213796	F038218	AGG	MNTELLNAIQNMLINFANENAISLADEFGTREKFAQFVFSFTIKSVVDICGLDAKTAYDFVMGDGAFAKLADDCWQQLNAVAA*
Ga0075479_100213797	F093801	AGGGGG	MFQYPTQNTTAPVCPYCQASHPEPEDLDESEAHCIECDDCGKLYAAVCDYQGWKTRCGSNHKWHALNGVRVCSRCGADG*