Scaffold Ga0075477_10149594

Overview

Basic Information

• Taxon OID: 3300006869
• Scaffold ID: Ga0075477_10149594
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 976
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020033	Metagenome / Metatranscriptome	226	Y
F056138	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075477_101495941	F056138	AGGA	MKKLLINGCSFAEYWKVSQKLINYVKCDSLVNLGKAGTSFQRTCRSTVEWIAQNGTPEFVMIPITFAHRWELALNKDEDDIDGSWVPLQNSNFLSDSYNLQESSVEEIKRLCDQYYKVIPTIKTYWDKLFTDIITLAGFLDQNQIPYLMWDMCNGFDIKHIQGYKGFEKIKFINQNKKVIDLWNFCGNRFMRDTMSEHLRAQTPEFAHHHAPPQLIHLEKKLMNYIKEQQL
Ga0075477_101495942	F020033	GGA	MKLSPRQIRMMYSHLEDPDIDEDFWPMMGVLAVIVGVWTGIIHLLDWLTFDFIPWWVEPFTIAPLILLLAMKEIY