 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006868 Open in IMG/M |
| Scaffold ID | Ga0075481_10012755 Open in IMG/M |
| Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3363 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware Bay | |||||||
| Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013407 | Metagenome | 271 | N |
| F033412 | Metagenome | 177 | N |
| F034560 | Metagenome | 174 | N |
| F055697 | Metagenome | 138 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0075481_100127551 | F033412 | GAG | MTAEIDAEFWRVLLAAWGCFAMGVAIWHYRNELHGYGLQPVGRLLLAISPALLSAFGYHSTEAVRTVELMAQAVPVRHVGHEIEPVIADRDTIVTPGGARVEYIRTNYGPERRGAGSVRVGDEHTGRR |
| Ga0075481_100127552 | F034560 | N/A | MADDNETPQDGDDNGIEWRTLNRTVRVDAATSQKLIDWIGPHLRLIVAAVAWGVFIVATCYAASLVL* |
| Ga0075481_100127553 | F055697 | AGG | MRTAAAVFVFCTVLHFPVPDGWKFTIAEPPAAAQLDWYLVSFGAEWCGPCRAWKRDHLAATRKVLPVVTVDIAKAPEWKRSRQLAAPPGGRATIPGITRVPTFWLVHRASRWPVKTWVGGRTAEQVRRLIPETVPGWTRETEAAPPLPE* |
| Ga0075481_100127556 | F013407 | AGG | MSGPITRHHWDALAADIYARNGYRNYGIDPMSILAMLNTIVPQVLQWVADCKRLRDDEVQPAVAAMHARNPGQAKRRTAAQCVKLRRKQGEQFCKEFNVPRAKRRAILQADFTLSDEQATEMAEDMIAECCNRPAEDVARFAAAARGA* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |