NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075481_10001042

Scaffold Ga0075481_10001042


Overview

Basic Information
Taxon OID3300006868 Open in IMG/M
Scaffold IDGa0075481_10001042 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10710
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022909Metagenome / Metatranscriptome212Y
F034245Metagenome / Metatranscriptome175N

Sequences

Protein IDFamilyRBSSequence
Ga0075481_1000104210F022909GGAMVDLNNKKILRTFFNGEIGCVEYDNDWLPQLKEFCDIAGDLGYVNNASPEAMKVDEIQYHCMIHIPTKKIYAVAGVQYMPEYKEGYYRIWTRLCRIPNADIPMTNTRRYGRGEMPEFDGLLYYNCEWATQQPNFKATFGTTLANKAYSDNYVRSANTITDYVAKNWWKRKGIAEPEGITEFYMVPQVVWRMYFDKFKELSK*
Ga0075481_100010427F034245GGAGMRGVTFSEFGNGQNVDMFVHAPEVIPGTPMQEAVKTARAIREKFTKDLYVWCDYSVQHIYSQIAMQAFKMAGIEFVAAIPVLSNNLSKRENECTVAYCEKRNIPYKLFPIDVPALFNGPELEYYGEKFPTTQPQMTIAGKFFDLLPDCCIVYPGFMMHVSNSDWTRTKNNGFMPFVPHQTQEHAAEVSGKEYTNFQEHYVNMYTSWMFTQSYGEVLKSATQEFVDNAPHRYYQYEMRTIKQAGFDIKPTTQKLIGIELLKSFFGHDKYDRELRQRLSQFGPLTLKYASLQYTVKVDTKLKHMLETHHGKTFEYIDKLF*
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Institute for Fundamental Biomedical Research
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