Basic Information | |
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Taxon OID | 3300006867 Open in IMG/M |
Scaffold ID | Ga0075476_10014424 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3471 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F027446 | Metagenome | 194 | Y |
F033780 | Metagenome | 176 | Y |
F060870 | Metagenome | 132 | Y |
F103171 | Metagenome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0075476_100144241 | F060870 | N/A | ATASIIVATITAVGGILVAVINKFRKENHTDHQVVMGILHVVRKSQQRVEDKVDRVDERLASHLESHALEGMLDNGRTVHKTRTKKNRNVS* |
Ga0075476_100144242 | F103171 | GGAGG | MGEQFTKLELRKIATYLRKVYPGVAEQDELWNLIAKVDQLVKGKHARPDRRRGDSSPST* |
Ga0075476_100144245 | F033780 | GAGG | VTPCPWSLVAVHWIDAFDSSNGWIHTKDYAPKPQHVVSVGWLWPDLLEGYLSVTCSWCPDEEPELDSVGMVTHVPLGMVQKVVVLGTPDF* |
Ga0075476_100144248 | F027446 | GAGG | VTDERKGECQGNRDKCSLDNCPLFGTLGRPDRNQVRRVRGCADPAARGRRNRTKGDAKARRARKKLGLGGHLTRHEENWGGAF |
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