Scaffold Ga0073934_10001945

Overview

Basic Information

• Taxon OID: 3300006865
• Scaffold ID: Ga0073934_10001945
• Source Dataset Name: Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46087
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (90.20%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 60.1987
  • Long. (^o): -125.5127

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000660	Metagenome / Metatranscriptome	952	Y
F016420	Metagenome / Metatranscriptome	247	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073934_1000194550	F016420	GGAGG	MRQSLERLLAASLLLAAASIPAKAAEREQVRIVINLMAAVKMPFPEGLQRNRARTQRVWLDYNGMATVACLRLEERRWCYEHIPPVGARAEMLRIRNEPAGGIQVGQLYHYVDDFDLDGMIDVGSTTRIEGPRQAPVGVVIQFFHRATNRGEQFRTEYQKMYDEGIQIALKYLGE*
Ga0073934_1000194551	F000660	N/A	PAWAAEREQVRMVINLIAGVKMPFPQGLRNNLARTEHVQLDTNSASLACLRLDDKMRWCYEHIAPVGARAEMLRIRSEPVTGLLVGQLYHYVDDFDLDGSVDIGSTTRLEGQPHAPIGVVSQFFHRGTGRGDQFRSEYQKMYDEGIQTALKYLGE*