NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073934_10001518

Scaffold Ga0073934_10001518


Overview

Basic Information
Taxon OID3300006865 Open in IMG/M
Scaffold IDGa0073934_10001518 Open in IMG/M
Source Dataset NameHot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)55035
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (56.25%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)60.1987Long. (o)-125.5127Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035362Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0073934_1000151810F035362GAGGMFTRRQAIRWAELWMSCWNEGDYETLLALYRDTSQFGARADADFATARDERIEAFRRHWAAVPFGIHSVRGELERVSWDPETRELTIVYATDLGGTRLYGCDLVTLDAEGRVVLGQPCVGCVADVDAVEDHALVYSLRQAEGGR*

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