Scaffold Ga0073934_10000840

Overview

Basic Information

• Taxon OID: 3300006865
• Scaffold ID: Ga0073934_10000840
• Source Dataset Name: Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 81053
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (79.10%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 60.1987
  • Long. (^o): -125.5127

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012236	Metagenome / Metatranscriptome	282	Y
F042963	Metagenome / Metatranscriptome	157	Y
F054431	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073934_1000084017	F042963	GGAGG	LKDPVVRMFTSDNGTVRWTTMAGAKGLEFSVCGPDGWRNSSYFTDPHALVRFQAEYERFLRDSGYLVSLVSERRWRPDRRAVSRPGSDRRRPA*
Ga0073934_1000084022	F012236	GGA	MASVDRAVVRMFISEPDTVRWETRITDGRGLELKVFGPGNARRTQAFPDVLSLVDYQVQYEQQLLANGYTVLPLGERRSGYDRRQQGRTTQDRRRQ*
Ga0073934_1000084023	F054431	AGG	VKTEASGTLHIVASSDAPAVTNAPARRLTLARRHIETAIAHINDVAQSRIPLSTDAERAPGVEELRLIVRALADIREALRQSDTSTPLDNRN*