Basic Information | |
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Taxon OID | 3300006865 Open in IMG/M |
Scaffold ID | Ga0073934_10000279 Open in IMG/M |
Source Dataset Name | Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 153644 |
Total Scaffold Genes | 150 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 101 (67.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: British Columbia | |||||||
Coordinates | Lat. (o) | 60.1987 | Long. (o) | -125.5127 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003191 | Metagenome / Metatranscriptome | 502 | Y |
F023186 | Metagenome / Metatranscriptome | 211 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0073934_10000279108 | F023186 | AGGAGG | MEPALPKKSNVISLDQVNLRAAKCEKCGAKMYPRSLLRPHLSRHRRRQRWVNSELRKLQHTFAHMRDIA* |
Ga0073934_10000279119 | F003191 | GGAG | MIRPDFRKILLDQRGAAVILWSFFFMSVPIYVAIARHLLNDPDLGTNPSIARPARIFFWLLAVIDIGYYFYWRDRKVSAAAIQREARKTKLFRALESYQGAAEERAAYAVATLVTRKVVIFAIIEALAVYGFVLAFLGRFVADQIVLSLLSLVLLAVEFPSVKSFDKLLQNTEGWTS* |
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