NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075459_1000061

Scaffold Ga0075459_1000061


Overview

Basic Information
Taxon OID3300006863 Open in IMG/M
Scaffold IDGa0075459_1000061 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15233
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (86.21%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002707Metagenome535Y
F009140Metagenome / Metatranscriptome322Y
F034109Metagenome175N
F034503Metagenome174Y
F040534Metagenome / Metatranscriptome161N
F097199Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0075459_100006113F002707AGGMTQTQALTKALVLAILAPDDDKAAQAASLAEQIAQGLTKTQVNRCKTQALKIIGENP*
Ga0075459_100006115F034109GAGMANRINPNRTQTDFKLHLSPEQRAILELIGGGNMTQGIKVAIDQAGHFYNCGLDPDMNLNFVGLVTTLPGQDDD*
Ga0075459_100006120F097199AGGAMSEALNRVIEEQQKRIDDLLEGNKKLIERSARVFKQNEELFEAVAKLIDFRMDYDKWEDKQREAYGSLRHGVRMQMIEAGYCVTCYNFMAHCECDYE*
Ga0075459_100006121F034503AGGAMNKNEAHQLLDKRKQGLAVPQYLVNRALVVSGDISMACPPCQTARMEGSGMAQGEGVRGLPYPLMAWDNPGFNQRNEGTQ*
Ga0075459_100006125F040534AGGAGMNTDKSGAGRIVGLSTLGEPMSEEDFEKKMDRGELDYEYAEYLMDHRSVGNGEILIRLMERNELYDDFKDHMTRGKK*
Ga0075459_100006127F009140AGGAMRLNLTHKTLLKRLTDGPRAMFELTHSNTNDNAVSFHYAKYLPELERFGYVIFHDDKWHLTQYGRMEMNRAVSGAAMRIENGSVREKYDGRELRRSVFRAGCYDFLNHPSRFGDNLVYHKGKI*
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