NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079046_1005742

Scaffold Ga0079046_1005742


Overview

Basic Information
Taxon OID3300006859 Open in IMG/M
Scaffold IDGa0079046_1005742 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_host_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2365
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → Thermoplasmataceae → Thermoplasma → Thermoplasma volcanium → Thermoplasma volcanium GSS1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050482Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0079046_10057421F050482N/AMESDKMNHETMEQELKKMGFNIIDVKNRFPSHTYHIYAVLKNGYALSICQGIGVHSSIGKDPYTQSETFEVALGRYVGGVFYLIYEGKWKDDVLGWQSPEDVIELAKSVKRLRL*

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