Scaffold Ga0079046

Basic Information
Taxon OID	3300006859 Open in IMG/M
Scaffold ID	Ga0079046_1000480 Open in IMG/M
Source Dataset Name	Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_host_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006859 Open in IMG/M

Scaffold ID

Ga0079046_1000480 Open in IMG/M

Source Dataset Name

Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_host_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10055
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (50.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

10055

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (50.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Yellowstone National Park
Coordinates	Lat. (^o)	44.7315	Long. (^o)	-110.7113	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Yellowstone National Park

Coordinates

Lat. (^o)

44.7315

Long. (^o)

-110.7113

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033508	Metagenome / Metatranscriptome	177	Y
F047176	Metagenome / Metatranscriptome	150	N
F065947	Metagenome	127	Y
F072527	Metagenome / Metatranscriptome	121	N
F101506	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079046_100048011	F072527	N/A	MSQQPNRLAELLQQAVLAFGAERVQVLQKIRQYIAQTDCTVLNVQLQQITNINMLRMLQAAGVPQCMQTTFYLQVNKALKGVKP*
Ga0079046_100048013	F101506	AGTAG	MSEDVVARTRISAVEQRIQNLEAQINDIRATQLRQLERQNYVLALLAISLITTIVNLIVLLVK*
Ga0079046_100048016	F065947	N/A	MRTLLSNRIFSLSKIRSVLKHKQNNELPCVAYGTGNLSRRVGRGYFFYDYDTQNEAEVQRFRKYVQHNFYVAYVLFRTKHGVMVMTTLTFPFEQLRKYYDQFQAQFPSDYLWDIPLFLRISEKWDWQTGKVVSAMPQIIDNPKKINIYELIRQDMYPKKWYRTSD*
Ga0079046_10004808	F047176	AGG	MATRIFRFTISLNAGQANNGAQGNPSPFTITAPSGINRRIVEIRPWGTQAFEYQGNYDTELYHDIDSNDINTYHRPHYVALDINGTHQYSIVITNNGSATGTFGVDVVVEESALTGGGAAAPAAPAA*
Ga0079046_10004809	F033508	AGG	LAAEAAAAPFVSPTTLRRVSGSSTTQLTIPARIGYRHILYDLFVTNPPSYGYADIAVGTRVFIRLPFQAANCVTVSNPGQKHAGKGFLWGLSDLFGAENLPNAAEDEDINITLNAAATRIDAYYAEIQPQDVSSHSVNGGSDAKVKPFIEILDTLVNSAGTSINVLNENMPTGLGLLDISGRVKATTQFTLLTMFADYVSSGTNFTEYSRLHIFDEDEELFTPLNHEGLFIDYTVTQGDLYMNFPARLYFKPDQPYIFKPNHQISVKADVAAVTGTGSTLRVALIGIRERLG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079046_1000480

Overview

Ecosystem & Geography

Associated Families

Sequences