Scaffold Ga0079048_1008731

Overview

Basic Information

• Taxon OID: 3300006858
• Scaffold ID: Ga0079048_1008731
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - OSPB_host_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1485
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.733
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008949	Metagenome / Metatranscriptome	325	Y
F011097	Metagenome / Metatranscriptome	295	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079048_10087311	F008949	AGGAGG	MSSQTITLGTQTITPKVEDLGNTYYIEFQVKITKYLNNPTNQTIDVKFTCNKYKQVAAPRTDPLSPPTVQTVQKTIQEC
Ga0079048_10087312	F011097	GGAGG	MIRDVPLYTSGGTDPFTYQQTGGSPITGNGSNYQVLRFHPNYARLHIYITSLSGTSPSIQFAVGPAQSLLIRFPPTPSPNYTLPPITSPQYVYVIGNVNKTVVTYLNTNWQILQQVELPYNIFFNGAYVSWSVSGTSPSISAYIHFEFEDEEEGE*