Scaffold Ga0079048_1000448

Overview

Basic Information

• Taxon OID: 3300006858
• Scaffold ID: Ga0079048_1000448
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - OSPB_host_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9311
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Deltalipothrixvirus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.733
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038746	Metagenome	165	Y
F052280	Metagenome	143	Y
F067919	Metagenome	125	N
F070689	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079048_100044811	F070689	GGTGG	MTLEVSYNVYRRIIQFAKASDNPIPILRYKLPDGISKGDIIKIRSTRNTSRTKTLVAEVVDIKKYNTNRDSIPYDELKPIYEDYVNVIPKLGQIVIVYVKPINF*
Ga0079048_10004482	F052280	AGG	MPESQVLMIELERYGFRFYLNNNPEKSWFVNVNNARPEYFVFVEEKNREMISILDYKYEDFGVKNILELLIGMILRPNESFESLTGEKADIKEIHIFHF*
Ga0079048_10004486	F067919	GGGGG	LTTRSLSRGKELILINKGNEVEFLIDDADDGRVWIIKPEYHIKKGIMILEKRNGYIIRLIEKNLRKLGIRNMNELIELIRTRPSETVENLIGEKVKISKVTVKDLSNSNIDD*
Ga0079048_10004487	F038746	AGG	MIRKGNKYIVVIRTPKDLEDIRNNIDKYKNELKDGELIEIQISKSGKYMLKMMLSKDGIKYEISGEDKKHVLTVQNKDDAVALQKLIQILLAIAFNKPN*