Scaffold Ga0079048_1000411

Overview

Basic Information

• Taxon OID: 3300006858
• Scaffold ID: Ga0079048_1000411
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - OSPB_host_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9722
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.733
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026923	Metagenome	196	N
F058287	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079048_100041112	F058287	N/A	MSSTKSYFELIDKVCLQIKYLYTLFLESRIEPIKGLSGFLLLKSIYIIIKMVTELALGEVPPVNKDISEIDLSKIKEPRKTFDDVCWLIVNIFKLAYITQDNQKRYKLLSLLNKVENIFIDLVHSTVFDDDIDYDCVDKELMKIKEELQEVIKV*
Ga0079048_10004118	F026923	AGGAGG	MSDRTQLRLKVDITYDDVIRMFNEIEQKIRNEVVKLLPYPDVKLILTSFCLHRTIDDLYVVVVKYKADVRYLDLRDIKNIDVVIRSDGVYAVL*