Scaffold Ga0079041_1016664

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0079041_1016664

Scaffold Ga0079041_1016664

Overview

Basic Information
Taxon OID	3300006857 Open in IMG/M
Scaffold ID	Ga0079041_1016664 Open in IMG/M
Source Dataset Name	Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B host_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	938
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Yellowstone National Park
Coordinates	Lat. (^o)	44.7219	Long. (^o)	-110.7021	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011097	Metagenome / Metatranscriptome	295	Y
F030159	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079041_10166641	F030159	N/A	IYIDKSVISPKGKTLVTVPPLIFGQTSPGGSYYVISGNYGTGTIYHGVVAYTFGKKYARVYLNINAGNGAFVNIYTRYRARTAPDLQQMYGNSPYPNNTAVYYPVVEMNFGTLVYATDYSYNMPYATDYPRTSKFRVDDQVLWVIIKQSSSPVWIELEGD*
Ga0079041_10166642	F011097	GGAGG	MIRDIPLYTSGGTDPFTALPVGGSPITGNGGNGQLLRFHPNYARLLIFITSLSGTSPSIQFTVGSYYGSNNYTLPPITSPIYIYVIGNENRTIITYLNTNWQVLQQVELPYNIFLNGVNISWSVAGTSPSITAYIHFEFEDEEEGE*

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