Scaffold Ga0098066_1005927

Overview

Basic Information

• Taxon OID: 3300006856
• Scaffold ID: Ga0098066_1005927
• Source Dataset Name: Marine viral communities from Cariaco Basin, Caribbean Sea - 25B_WHOI_OMZ_CsCl
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2330
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Caribbean Sea: Cariaco Basin
• Coordinates
  • Lat. (^o): 10.847
  • Long. (^o): -65.114
  • Depth (m): 247

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032241	Metagenome	180	N
F038425	Metagenome	166	Y
F061287	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098066_10059271	F032241	N/A	KKSVLTYKVGGYTPSEIEKATNDEALRRGLTDAYLESEKQIGANVPRAIKYDLKTIETEGNHSPEEKRLLGKQFLLDFINQGSRTRDTESHFLLYQQKATKFLREVQHWNLSGLKTKEVSVLVGLIENVYNYFKEERRLNGQMFPRKAGENIFGAKETGRDSD*
Ga0098066_10059272	F038425	GAG	MDGERSEVHCPHCDELLWWWAYASSYTGDGSAELGLGCENEKCEGHEVLPEDVYDAIVTEEERIDG*
Ga0098066_10059274	F061287	GGAGG	MHKNDRETMIKELMTVKLRRKLLETMRDSEIQSLFSILKRYFR*