Scaffold Ga0075425_100401541

Overview

Basic Information

• Taxon OID: 3300006854
• Scaffold ID: Ga0075425_100401541
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1579
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003321	Metagenome / Metatranscriptome	494	Y
F003811	Metagenome / Metatranscriptome	467	Y
F037379	Metagenome / Metatranscriptome	168	Y
F090165	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075425_1004015412	F037379	GGA	MAKMNGSRRWLVAVGACAALFLMGESRSAAAASAQDCRAFHQECTEARAAGYREVGICNVERLECPADRDASVPKRSREGRDDDGHDPERAVRERSIGP*
Ga0075425_1004015413	F003321	AGGAG	MSLIPGTRCRSARNIVFPGGVVRRATQGTLVSQRENLGRELFTVNFDSGQKLILFAHEIEPVSDDLAA*
Ga0075425_1004015414	F003811	GGAGG	MARNVTLLDLVNAVGEHARSEAEMIATIVYMVNQGHVRLRGTFRGARFDVTSFTAA*
Ga0075425_1004015415	F090165	GGA	VRFTDTTWLPVVIMVSVLTAAPRTSAACRWFGTQLECDVGASRVVIGTQAAEEPTPARSFPIRSFHGNSGFPDDHAASGRPFEIELQDFAADPSRCRKIGNETYCY*