Scaffold Ga0075425_100144978

Overview

Basic Information

• Taxon OID: 3300006854
• Scaffold ID: Ga0075425_100144978
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2719
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000801	Metagenome / Metatranscriptome	886	Y
F010204	Metagenome / Metatranscriptome	307	Y
F033091	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075425_1001449781	F010204	N/A	MRCFWEQTGVLGPIYLALGQGLNDQDIAKKLNLTELKVHNCIAWIVHFLKLKNRQELVVYASSAA*
Ga0075425_1001449784	F033091	GAG	MTACLESAWQSKMDPVSSTWKLTVTDRRLMWLQKQHPGARGQKLQLWASGAFKQSPSTAAKT*
Ga0075425_1001449785	F000801	GGAG	MADKEWTVKELIEALKRFPLEAKVYYEMGPNGPATLGKAQYVNVWGDEEMGVLLER*