Scaffold Ga0075425_100143878

Overview

Basic Information

• Taxon OID: 3300006854
• Scaffold ID: Ga0075425_100143878
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2730
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000517	Metagenome / Metatranscriptome	1061	Y
F009201	Metagenome	321	Y
F018957	Metagenome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075425_1001438784	F000517	AGGAG	MRMCLALLLAAVFALSPFDGIAGEKQIVDVKELAGRWQGWVTREQGQERATLIVSADGSYRALTPQGASTEGKFYLQDGKLRYRSSRTTGTASFSEDRGKTMLTVMPEDPKYHTGRAEYERVKE*
Ga0075425_1001438785	F018957	N/A	MTRWLVVVALLAGCATQQASQPDCTMKWTGQPPVQVDSCTGRGEDLTAGWHWYDYVFGIPFGIVGFYDPARDAE*
Ga0075425_1001438786	F009201	GGAGG	MVPNVSLRFLNRRTNRQVCRVCHELAELKTERLCAVCAHIKSQISLRFAEAVGGTISIPAAQQCKRSGCSCAACDRRTLDLHPRYVFDLARADRREIHFHPRCHELWLEAVKGLNSGPEQAPDIGQG*