Basic Information | |
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Taxon OID | 3300006854 Open in IMG/M |
Scaffold ID | Ga0075425_100039557 Open in IMG/M |
Source Dataset Name | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5262 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Tennessee | |||||||
Coordinates | Lat. (o) | 35.8444 | Long. (o) | -83.9599 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F004943 | Metagenome / Metatranscriptome | 418 | Y |
F008278 | Metagenome / Metatranscriptome | 336 | Y |
F067483 | Metagenome / Metatranscriptome | 125 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0075425_1000395573 | F004943 | AGGAGG | MTRVQPKATPNWCLQVKADEPWTGRCVKEKIAADGKRHRCHKPETHNDNVHACQCSVESKQF* |
Ga0075425_1000395574 | F008278 | GAG | VNAPLIVAGFLAILGAAIHGVGGEVLVVRKLSPEVLPSSAFGGPRTTKLMIHVTWHLTTIAFLTVGSALLLSGSILHGDTARGIGLVAASASTGFAAIAVGLTAAYTQSPRFLFRHPGPALLTVTAALAWWGVL* |
Ga0075425_1000395576 | F004943 | AGGAGG | MTHVHPKPMPNWCPQVNPDEAWTARCVKEKIAADAKRHRCQKKVGHDDNVHTCKCGLEWKQW* |
Ga0075425_1000395577 | F067483 | AGGA | MRAGGEFRVENAMSDTDFVQITATTDHVTGQALLYALTRAGYVWQYAFGKQRWEILPTTRA* |
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