Scaffold Ga0075425_100006546

Overview

Basic Information

• Taxon OID: 3300006854
• Scaffold ID: Ga0075425_100006546
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12222
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007132	Metagenome / Metatranscriptome	357	Y
F011178	Metagenome / Metatranscriptome	294	Y
F026373	Metagenome / Metatranscriptome	198	Y
F064021	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075425_10000654611	F064021	AGG	MKKTLLAFSVAALALTGCTSIMNTTLPPGRMSEAGAIRPCHNDHRDAQACGNAIFNEGVIAQIHTGQTLTDVRAIMRHEAERRTVEGSNESWGYITSYGDKVMTWIAFTDQKVSSVTQQPWVRD*
Ga0075425_1000065463	F011178	AGGTGG	MSAAAEVMKITIRDRGPSLRERLRERLALAAALRCADHDQPIIAVTIHGQENGWFDSTWTTCCEALEQQAAAIVKQRC*
Ga0075425_1000065466	F026373	AGGAG	MLVNRSFDEIRVYDGMAERTGVQFDWADVRRSAGYCSSLTELHRKVRSAGDGCFYLPLNSWPVDVSQLNVQNRWVVM*
Ga0075425_1000065468	F007132	AGGA	MRQVVRVTATKILRSDNLVGDEKAVASGILLANPDLGFPHVVRCDWCHETRTLFNDENDGPFSRTTPRGWRCEPCDVRAISQEIRF*