Scaffold Ga0075425_100000012

Overview

Basic Information

• Taxon OID: 3300006854
• Scaffold ID: Ga0075425_100000012
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 194901
• Total Scaffold Genes: 165
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 116 (70.30%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001368	Metagenome	713	Y
F029793	Metagenome / Metatranscriptome	187	Y
F048526	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075425_10000001212	F048526	N/A	MNRLPILFRCGVTTSAIALAICSATFQAKAASWNGIEPFKSRRAEVTKILGQPISESADGTMRFNVMGGSVQVTFVNEKFVESKKLRPDLAGTVLEIVLQHDHSSDTPESLKLGENRSFTRDETQSSLIFRNPKDGIAYTFQRGTLRTTRYTFADGQLTRARR*
Ga0075425_100000012124	F001368	GGAGG	MDRDAATTERLRQLVSKLESLTEAGDLHWERQAGSAHRYARWNNNLLILGPATPLSESSVPRYLFITPFDSPDCIEVNSEDAELGAAVTQLVNEVEKVSKAEPATDPFGITEQMLERLESM*
Ga0075425_100000012156	F029793	AGGAG	MKLIRVVVFSIVCLIAITSIVVSNFAAQPAVSVAGVYENFTIGKGSGDLEGMRVVIVPAGGGYYAIVQIAQGGAEDPKPEFVPAEVKGKTARFTVGDEKYTATATAAGLTVKNSAGDTQMLKRKPCAAFFK*