Scaffold Ga0075425_100000001

Overview

Basic Information

• Taxon OID: 3300006854
• Scaffold ID: Ga0075425_100000001
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 421816
• Total Scaffold Genes: 418
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 223 (53.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002324	Metagenome	571	Y
F004159	Metagenome / Metatranscriptome	450	Y
F013826	Metagenome / Metatranscriptome	268	Y
F036379	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075425_100000001246	F036379	GAG	MLTEGIDVFTENRLPLQERVVDKLADIMFASDMIRDMLADKRFVEAQRLETVKIAVQGIYDQVNGLMHQLTD*
Ga0075425_100000001300	F002324	GGAGG	MGEYKHFQICYEGDLTAGVSHAMRRLGAEPNFDQSWQVWLSPRRQAAPLVRWMRARFGEARMLAAATQFTRTRDFLLVRHSLTPGADYGELHDAIHRLGVVIELPFESTFVVQSRDRTDVQTLGQALGELCPDASLMVTGIGDDWAYCDGDMIHSAISSLNDHASRSQRTAHPSRR*
Ga0075425_100000001304	F013826	GGA	MAVCWRCPLCNEVSCEDDANAAGLPVACDHCERPFVPEATLCAVCDAPNPWARRDTLHFLCRECGTTQTFSFNRIAS*
Ga0075425_100000001380	F004159	AGGAG	MATTRDDDDHERSAAGMDYDFPIREQASHLGSSIAENGPEALFDEIEKLLPDSWREQIQSWPIAAILVGFGVGVFLGMKKGDELIAAGTSMVTAAAMANVTNVMERATGVGGAD*