Scaffold Ga0075433_10019455

Overview

Basic Information

• Taxon OID: 3300006852
• Scaffold ID: Ga0075433_10019455
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5658
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013098	Metagenome / Metatranscriptome	274	Y
F015750	Metagenome / Metatranscriptome	252	Y
F016870	Metagenome / Metatranscriptome	244	N
F020983	Metagenome	221	N
F023196	Metagenome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075433_1001945510	F013098	N/A	MRLACLAAVSAAAILVGGCSTAPFIGYRNGPVTLYIGDVRHVCAAGGSSRGCTMRYPNGRVEVYCADGDYECLAHELRHVADPTWQHDLDYRSVSAR*
Ga0075433_100194552	F023196	AGGAG	LAGARRYRFLGILALIQTVAGCLIIFAAALTAFAVLSPWPAMIVSRVPGEWRGSLAPAAIGGVAAAIVLGGSLAITGQMLLLLRDIHRHAARLDRRDARRGRDPGRSADQPDATSRLLPRR*
Ga0075433_100194553	F020983	GAG	MRWDESPKFLLIASIASAALSAALGLAAIWDHPGYNVAAAALALLTAILGYRAYERSTHRRLGRIQREHLVLRLRQLPAPSEFRVVAVPDDEAVRFAQELLDVFVEGGWPAHGVYRALPANVASTGLFVAVQDGNYPSEEERRLLLTLSEFGMYAVKSTSPKLTHPKAIELLVGHRPTM*
Ga0075433_100194555	F015750	N/A	MDFGAIRLTIRRKLENGRLPLERAARVFGRSPAGEACDGCDLTIGPGQLAMDALVPKPAKRAVRLHLRCFEIWTQERYSLLRDRQQPA*
Ga0075433_100194559	F016870	GGAGG	MYDRTIDRMSDGASEFLVQFYLSSPKLSVSILLAVWLIVFFSALWYFVLLPATSNNLVNGSFEARLVGWGTGWLEDFPAYRGAARLNQYLATRSSQTGQLAVADWRSDPTEHRPGGRFALLVEHRSDKQTEVYSTLAQRIRVKPRTGYNVRFWAKVDRMEHDGDLWLSPNGGSVAWDEPKVEVSGAGKGWQLYRLDFNSGDRVDLDIRFVAEGPLKAWVDDVVVSRVPAGETWVEGVGSWLRSLWSILR*