Basic Information | |
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Taxon OID | 3300006852 Open in IMG/M |
Scaffold ID | Ga0075433_10012806 Open in IMG/M |
Source Dataset Name | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6794 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (78.57%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Tennessee | |||||||
Coordinates | Lat. (o) | 35.8444 | Long. (o) | -83.9599 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000432 | Metagenome / Metatranscriptome | 1148 | Y |
F005151 | Metagenome / Metatranscriptome | 410 | Y |
F011157 | Metagenome / Metatranscriptome | 294 | Y |
F080574 | Metagenome / Metatranscriptome | 115 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0075433_1001280614 | F080574 | N/A | QAVDTSGTVVGQRIAYVPGGVGGFGRAYFIVPDLPVADNYRVSVWDYTWFQAPKDRR* |
Ga0075433_100128063 | F000432 | GGAGG | MPDESALRAKAREVIRAGRLPNRRPDRTWGGPGVGAPCRICGEPVTKNQLEFEVQFAFDGVEPGLDKFHLHVRCFAAWEFERARDGEHS* |
Ga0075433_100128065 | F005151 | GAGG | MDQESLRLVIQRKIRDGRLPHHSIGRIWSSPSAGETCDACDAAVLLDQLVMEGITLAPTKRAFKFHVRCFQIWESERHTAA* |
Ga0075433_100128066 | F011157 | GGAG | MRVGAALVALVLAGCAHASAVRYTFMPCNPGFQDAVVACFYEAGMGPPIAAYDFYADSGIIEQQWKKQYESCMLRRGYNQVYGTTTWKPKERFNGAAGWPWPNDPPKSAWTWVRTAGAGDRHYYDAVCEP* |
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