Scaffold Ga0075433_10012556

Overview

Basic Information

• Taxon OID: 3300006852
• Scaffold ID: Ga0075433_10012556
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6848
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001330	Metagenome / Metatranscriptome	721	Y
F005332	Metagenome / Metatranscriptome	404	Y
F071589	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075433_100125564	F071589	N/A	MAGCTLFPAETGVKLTLQGRAAMIAAMRSRVACVAVVGLVAAAGCNEGLTPTPACPTRFVGICGTATVRGTLPDSTQGLFIVAYRTFPESIQALLTFQPLPPPAVLLPPAGDSTMFYTVRLPSGRYEWVLAVWQKRGTLRPDFSNADSLFREAGFYRDAGDTTSHGSGIVVVNDSATDSIDFVIDFGNMHRICTYFPPCP*
Ga0075433_100125566	F001330	N/A	MLDGVLILNLLLQGFQASPLNGTWELTRIFRSGPVPSTRAVPIDSTVYLRITLETHVGDWISGRLYRRYRGEPDRSKVEAGPLRGEGRFIIGVEIEKPAWARARTAAWLVRDTLRFGTSLVPDADSLELQRVNPDAPYPASVLEVVTPP*
Ga0075433_100125567	F005332	AGGTGG	MTRLLFGMTLFLSCGGDRSRSPTCGMAQLIGPSLIQDRLRQLPFVLTDAPRGLPGSLPVRVVGTRQQNTVVMGYPKGALTMEYQGAGFPAGSVSDTTTYAVLVVDDSTQRAQGVLIYESHRPPDGYPTIGTLAGEARPVPLYGVRVDWGGVSNPKCPLLGAAPAGSPNSAQ*