Scaffold Ga0075433_10005336

Overview

Basic Information

• Taxon OID: 3300006852
• Scaffold ID: Ga0075433_10005336
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10088
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006727	Metagenome	366	Y
F006969	Metagenome	361	Y
F022557	Metagenome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075433_1000533610	F022557	GGA	MVELILSEAQLACLKAAVTVGSYESAALGRAKGLGTVFNPEPVVVKCTRAIAERLFTVARRSCPDVAPQIRAAIEQAKQ*
Ga0075433_1000533612	F006969	GAG	MEHQIGDRPTDETGEWEIIGRPYTTNAGKDARVRVRRVGKTGGTEIRVLRAHERVRVRRT
Ga0075433_100053368	F006727	AGGGGG	MSNRWILSACLLALAACASPQPPVTALVVEDADRVRGCRPLGTIADDQLDDLAKKAARLGGNVALMTPQRKSKGGYFGLQDYMTADVYRCEGNR*