Scaffold Ga0075433_10002041

Overview

Basic Information

• Taxon OID: 3300006852
• Scaffold ID: Ga0075433_10002041
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15261
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004365	Metagenome / Metatranscriptome	441	Y
F034362	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075433_100020415	F004365	GAG	MTPRTVRTLRLPAALAALLLVAPACFVFNRENKAPASPAIDVPEGEIALSVTNHNYLDVVIYVLHDGLQTRVGTVTGSSSAVFFLPTRLLGHGREIELYGDAIGNDAYARTEVLIVQRGQYIEWTLETDLRRSSVGVF*
Ga0075433_100020417	F034362	AGGAGG	MSSHPVLLVVLASLLVGCYNYLPLAQSHLTPSTYVAVTLTESGSEELAPYVGPSVVIVRGRIVGPTDRGLALSVASVETRRGNSLEWQGEMVVVPAEFVRAIEERRAARGKTVLLAGVSLVGFFTAYAAFGPGTDGSSLAGGSGGSVPR*