Scaffold Ga0075433_10000777

Overview

Basic Information

• Taxon OID: 3300006852
• Scaffold ID: Ga0075433_10000777
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21988
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003589	Metagenome	478	Y
F005262	Metagenome / Metatranscriptome	406	Y
F005616	Metagenome / Metatranscriptome	395	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075433_1000077713	F005262	AGG	MRCALSSLVALLTLAIPLAGQATPGHVYWVGFYQALPGKAAAYNQALTEIVDPVLDELVRRKQMVSHVQLAQYAGAGENTNLVILEFPNWAALDTYDARLDEAARAVLHKPFSEATAGFVELRRLVRLEIYRPASQ*
Ga0075433_1000077715	F005616	AGGCGG	MTPDAADRLRGEPLDFRIPRTGDRDLAFRGWLLSHAEERDSSATLTRGLDIDIYLTIRLRLVAHLCRWSLREGQGLREEHRVTAHDSAAELLEWLKQENAGRLDAPSKRAWVRACQAWPGLKREAVERVD*
Ga0075433_100007775	F003589	AGGAG	MSDDALLHDEQLQEVARRLGARAADRLDVERTAQAVVARLRTEPRAEIRVLGRIRPAWLRIAAMLLVVVGAAVVVRSVWHNQPAATHLVAGAGGGGGAELNDLSLDQLRQVLEDVGQPGEEYEAVSSQDVGLEDLSALELRALLESLEG*